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Data-Driven Ontology Toolkit 1.0 documentation
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B
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C
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D
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E
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F
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I
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L
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M
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N
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O
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R
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S
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T
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U
A
align() (ddot.Ontology method)
B
bubble_layout_nx() (in module ddot.utils)
C
color_gradient() (in module ddot.utils)
connected() (ddot.Ontology method)
create_edgeMatrix() (in module ddot.utils)
D
ddot.utils (module)
delete() (ddot.Ontology method)
E
expand_seed() (in module ddot.utils)
F
flatten() (ddot.Ontology method)
focus() (ddot.Ontology method)
from_igraph() (ddot.Ontology class method)
from_ndex() (ddot.Ontology class method)
from_networkx() (ddot.Ontology class method)
from_table() (ddot.Ontology class method)
G
get_best_ancestors() (ddot.Ontology method)
gridify() (in module ddot.utils)
I
ig_edges_to_pandas() (in module ddot.utils)
ig_nodes_to_pandas() (in module ddot.utils)
ig_unfold_tree_with_attr() (in module ddot.utils)
invert_dict() (in module ddot.utils)
L
load_edgeMatrix() (in module ddot.utils)
M
make_index() (in module ddot.utils)
make_seed_ontology() (in module ddot.utils)
melt_square() (in module ddot.utils)
N
ndex_to_sim_matrix() (in module ddot.utils)
NdexGraph_to_nx() (in module ddot.utils)
nx_edges_to_pandas() (in module ddot.utils)
nx_nodes_to_pandas() (in module ddot.utils)
nx_to_NdexGraph() (in module ddot.utils)
O
Ontology (class in ddot)
P
parse_ndex_uuid() (in module ddot.utils)
pivot_square() (in module ddot.utils)
propagate() (ddot.Ontology method)
R
read_pickle() (ddot.Ontology class method)
run_clixo() (ddot.Ontology class method)
S
set_edge_attributes_from_pandas() (in module ddot.utils)
set_node_attributes_from_pandas() (in module ddot.utils)
sim_matrix_to_NdexGraph() (in module ddot.utils)
T
to_cx() (ddot.Ontology method)
to_graphml() (ddot.Ontology method)
to_igraph() (ddot.Ontology method)
to_ndex() (ddot.Ontology method)
to_networkx() (ddot.Ontology method)
to_pickle() (ddot.Ontology method)
to_table() (ddot.Ontology method)
topological_sorting() (ddot.Ontology method)
transform_pos() (in module ddot.utils)
U
unfold() (ddot.Ontology method)
update_nx_with_alignment() (in module ddot.utils)
Table of Contents
Ontology Class
Utility Functions
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Data-Driven Ontology Toolkit 1.0 documentation
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